| 25/08/1945 | York City | A | League | D 3-3 | 4664 |
| 01/09/1945 | York City | H | League | L 0-2 | 6500 |
| 08/09/1945 | Halifax Town | A | League | L 2-5 | 5000 |
| 15/09/1945 | Halifax Town | H | League | W 4-1 | 5000 |
| 22/09/1945 | Lincoln City | A | League | L 0-5 | |
| 29/10/1945 | Lincoln City | H | League | W 4-3 | 5500 |
| 06/10/1945 | Hartlepools United | H | League | L 1-3 | 6000 |
| 13/10/1945 | Hartlepools United | A | League | L 2-3 | 5813 |
| 20/10/1945 | Doncaster Rovers | A | League | L 0-3 | 6666 |
| 27/10/1945 | Doncaster Rovers | H | League | L 2-4 | 5403 |
| 03/11/1945 | Rotherham United | H | League | W 3-2 | |
| 10/11/1945 | Rotherham United | A | League | L 0-5 | |
| 17/11/1945 | North Shields | H | FA Cup | W 5-1 | 6000 |
| 24/11/1945 | North Shields | A | FA Cup | W 3-2 | 4500 |
| 01/12/1945 | Bradford City | H | League | D 2-2 | 5000 |
| 08/12/1945 | Barrow | A | FA Cup | L 2-4 | |
| 15/12/1945 | Barrow | H | FA Cup | L 3-4 | |
| 22/12/1945 | Darlington | A | League | L 1-7 | |
| 25/12/1945 | Gateshead | A | League | L 1-3 | |
| 26/12/1945 | Gateshead | H | League | W 3-2 | |
| 29/12/1945 | Bradford City | A | League | W 3-2 | 5119 |
| 01/01/1946 | Darlington | H | League | D 3-3 |
The FA Cup had 2 legs home and away for this season
| 1 | Rotherham United | 18 | 12 | 2 | 4 | 56 | 28 | 26 |
| 2 | Darlington | 18 | 12 | 2 | 4 | 61 | 36 | 26 |
| 3 | Gateshead | 18 | 11 | 2 | 5 | 51 | 34 | 24 |
| 4 | Doncaster Rovers | 18 | 8 | 4 | 6 | 34 | 35 | 20 |
| 5 | York City | 18 | 6 | 6 | 6 | 34 | 34 | 18 |
| 6 | Halifax Town | 18 | 7 | 4 | 7 | 39 | 46 | 18 |
| 7 | Bradford City | 18 | 6 | 4 | 8 | 45 | 40 | 16 |
| 8 | Carlisle United | 18 | 5 | 3 | 10 | 34 | 58 | 13 |
| 9 | Lincoln City | 18 | 4 | 2 | 12 | 34 | 54 | 10 |
| 10 | Hartlepools United | 18 | 3 | 3 | 12 | 22 | 45 | 9 |
| 11 | Hull City |
Hull City Did not Compete
| 05/01/1946 | Darlington | A | NEC | W 3-1 | |
| 12/01/1946 | York City | A | NEC | W 2-1 | 4930 |
| 19/01/1946 | York City | H | NEC | W 3-1 | 6900 |
| 26/01/1946 | Bradford City | H | NEC | W 6-2 | 8000 |
| 02/02/1946 | Bradford City | A | NEC | L 2-3 | 3466 |
| 09/02/1946 | Hartlepools | A | NEC | L 3-5 | 5238 |
| 16/02/1946 | Hartlepools | H | NEC | L 1-3 | 7000 |
| 23/02/1946 | Gateshead | H | NEC | W 3-0 | |
| 02/03/1946 | Gateshead | A | NEC | W 2-0 | |
| 09/03/1946 | Darlington | H | NEC | W 5-1 |
| 23/03/1946 | Tranmere Rovers | H | NEC KO | W 5-1 |
| 30/03/1946 | Tranmere Rovers | A | NEC KO | L 1-2 |
| 06/04/1946 | Gateshead | H | NEC KO | L 1-2 |
| 13/04/1946 | Gateshead | A | NEC KO | W 1-0 |
| 19/04/1946 | Darlington | H | League | W 4-0 |
| 20/04/1946 | Crewe Alexanda | A | League | L 1-2 |
| 22/04/1946 | Darlington | A | League | D 2-2 |
| 27/04/1946 | Crewe Alexanda | H | League | W 3-1 |
| 04/05/1946 | Stockport County | A | League | W 2-1 |
Gateshead Won 2-1 After Extra time